Assembling, browsing and analyzing of short reads assemblies

3. SAM/BAM files (Assembly Browser). If you open a file with a short reads assembly, like BAM or SAM files you see the following picture:

Example 3: Highlighting the strand of reads. You can do this using the context menu or the Options Panel.

3D structure viewer

Building and visualizing of phylogenetic trees

Running dozens of algorithms for analyzing

Importing and exporting data into different bio-formats

Combining algorithms into custom workﬂows with UGENE Workﬂow Designer