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The element gets message(s) with annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, GTF, etc.).

Element type: write-annotations

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
Data storagePlace to store workflow results: local file system or a database.
data-storagestring
Output fileLocation of the output data file. If this attribute is set, slot “Location” in port will not be used.
url-outstring
Output file suffixThis suffix will be used for generating the output file name.
url-suffixstring
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).Renamewrite-mode

numeric

Available values are:

  • 0 - for overwrite
  • 1 - for append
  • 2 - for rename
Document formatDocument format of output file.genbankdocument-format

string

Available values are:

  • CSV
  • GenBank
  • GFF
Annotations nameObject name of the annotations.unknown featureannotations-namestring
CSV separatorString which separates values in CSV file(s).”,” (comma)separatorstring
Write sequence nameWrite sequence to CSV file(s).Falsewrite_namesboolean


Input/Output Ports

The element has 1 input port:

Name in GUI: Input annotations

Name in Workflow File: in-annotations

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table-list
Sequencesequencesequence
Source URLurlstring
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