The element searches the input sequence for transcription factor binding sites (TFBSs) significantly similar to the specified weight matrix.
Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Annotate As | Name of the result annotations. | misc_feature |
Direction | See the description here. | Any |
Matrix | Path to the profile. | You must specify a value! |
Min score | Minimum score to detect TFBS. | 85% |
Parameters in Schema File
Type: wsearch
Parameter | Parameter in the GUI | Type |
---|---|---|
key | Annotate As | string |
matrix | Matrix | string |
min-score | Min score | numeric |
strand | Direction | string Available values are:
|