Page tree
Title: How to Use Sample Workflows  
Author: Yuliya Algaer Jun 02, 2021
Last Changed by: Yuliya Algaer Jun 02, 2021
Tiny Link: (useful for email) https://doc.ugene.net/wiki/x/ugLuAw
Export As: Word · PDF  
Incoming Links
Unipro UGENE User Manual (53)
    Page: CASAVA FASTQ Filter
    Page: Variation Annotation with SnpEff
    Page: Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences
    Page: Raw ChIP-Seq Data Processing
    Page: Trim and Align Sanger Reads
    Page: Extract Consensus from Assembly
    Page: Extract Coverage from Assembly
    Page: In Silico PCR Sample
    Page: RNA-seq Analysis with Tuxedo Tools
    Page: Dump Sequence Info
    Page: Extract Transcript Sequences
    Page: De novo Assemble Illumina SE Reads
    Page: LinkData Fetch
    Page: Convert seq-qual Pair to FASTQ
    Page: Merge Sequences and Annotations
    Page: Convert UQL Schema Results to Alignment
    Page: Search for Inverted Repeats
    Page: Filter Sequence That Match a Pattern
    Page: Quality Filter
    Page: Merge Sequences and Shift Corresponding Annotations
    Page: Variant Calling and Effect Prediction
    Page: Extract Consensus as Sequence
    Page: Parallel NGS Reads Classification
    Page: Filter out Short Sequences
    Page: De Novo Assembly and Contigs Classification
    Page: De novo Assemble Illumina PE Reads
    Page: Call Variants with SAMtools
    Page: Get Unmapped Reads
    Page: Group Primer Pairs
    Page: Extract Consensus as Text
    Page: Get Amino Translations of a Sequence
    Page: RNA-Seq Analysis with TopHat and StringTie
    Page: Convert Sequence to Genbank
    Page: Gene-by-gene Approach for Characterization of Genomes
    Page: Marking by Annotation Number
    Page: Convert Alignments to ClustalW
    Page: Remote BLASTing
    Page: De novo Assemble Illumina PE and Nanopore Reads
    Page: Build HMM from Alignment and test it
    Page: Raw RNA-Seq Data Processing
    Page: ChIP-Seq Coverage
    Page: Raw DNA-Seq Data Processing
    Page: Align Sequences with MUSCLE
    Page: Search for TFBS
    Page: Serial NGS Reads Classification
    Page: Find Patterns
    Page: Quality Control by FastQC
    Page: Find Substrings in Sequences
    Page: Marking by Length
    Page: Search Sequences with Profile HMM
    Page: FASTQ Trimmer
    Page: ChIP-seq Analysis with Cistrome Tools
    Page: Intersect Annotations
Hierarchy
Parent Page
    Page: Introduction
Labels
There are no labels assigned to this page.
Outgoing Links
Unipro UGENE User Manual (4)     Page: About the Workflow Designer
    Page: Workflow Samples
    Page: Launching Workflow Designer
    Page: Workflow Designer Window Components